This sample will generate a skew graph for a particular DNA string and visualize the results using Google charts.
Showing which position in the DNA string is trending positive or negative indicating position relative to oriC.
Performance trends linearly, with the majority of time spent in visualization routine.
Sample has been tested with up to 45kp the analysis is quite quick ~20ms but the visualization can take 2 - 3 seconds.
Big thanks to Daniel LaLiberte for his help in making the visualization perform better.
Here is a sample data set to show the concept: CCTATCGGTGGATTAGCATGTCCCTGTACGTTTCGCCGCGAACTAGTTCACACGGCTTGATGGCAAATGGTTTTTCCGGCGACCGTAATCGTCCACCGAG
Total kbp | |
Skew Analysis time (ms) | |
Visualization generation time (ms) | |
Total Time (ms) |